Methods for and applications of phylogenetic tree inference have proliferated in studies of cancer genomics. Tumour phylogeny methods have become important tools for making sense of the complexity ...

Phylogenetic analysis underpins modern evolutionary biology by constructing trees that illustrate the relationships among species and genes. Gene tree reconciliation extends these analyses by ...

In this study, we use individual-based numerical simulations on stochastic phylogenetic trees to clarify the relationship between phylogenetic signal, rate, and evolutionary process. Under the ...

10 million sequences of COVID-19’s genomic code have now been organized into a phylogenetic tree in the UC Santa Cruz SARS-CoV-2 Browser, which is the largest tree of genomic sequences of a single ...

The tool, called PsiPartition, improves both the computational efficiency of the data analysis and the accuracy of the phylogenetic trees that visualize these relationships.

The COVID-19 phylogenetic tree, called UShER, was created by UCSC researchers and is the primary tool used by health officials worldwide to track the spread of variants in their community.

We derive a Markov chain to sample from the posterior distribution for a phylogenetic tree given sequence information from the corresponding set of organisms, a stochastic model for these data, and a ...

This phylogenetic tree, built from genetic sequencing and fossil data, helps explain the relationships between different kinds of insects across millions of years of evolution.